Skip to content

Commit 9ec5bc2

Browse files
committed
Manage TrackMate extensions
1 parent 6acbc47 commit 9ec5bc2

File tree

1 file changed

+112
-8
lines changed

1 file changed

+112
-8
lines changed

pom.xml

Lines changed: 112 additions & 8 deletions
Original file line numberDiff line numberDiff line change
@@ -904,9 +904,6 @@
904904
<TopoJ_.version>${TopoJ.version}</TopoJ_.version>
905905
<sc.fiji.TopoJ_.version>${TopoJ_.version}</sc.fiji.TopoJ_.version>
906906

907-
<TrackMate.version>7.7.2</TrackMate.version>
908-
<sc.fiji.TrackMate.version>${TrackMate.version}</sc.fiji.TrackMate.version>
909-
910907
<Trainable_Segmentation.version>3.3.3</Trainable_Segmentation.version>
911908
<sc.fiji.Trainable_Segmentation.version>${Trainable_Segmentation.version}</sc.fiji.Trainable_Segmentation.version>
912909

@@ -1022,6 +1019,56 @@
10221019
<spim_data.version>2.2.7</spim_data.version>
10231020
<sc.fiji.spim_data.version>${spim_data.version}</sc.fiji.spim_data.version>
10241021

1022+
<!-- TrackMate - https://github.com/trackmate-sc -->
1023+
1024+
<!-- TrackMate - https://github.com/trackmate-sc/TrackMate -->
1025+
<TrackMate.version>7.7.2</TrackMate.version>
1026+
<sc.fiji.TrackMate.version>${TrackMate.version}</sc.fiji.TrackMate.version>
1027+
1028+
<!-- TrackMate-Cellpose - https://github.com/trackmate-sc/TrackMate-Cellpose -->
1029+
<TrackMate-Cellpose.version>0.0.7</TrackMate-Cellpose.version>
1030+
<sc.fiji.TrackMate-Cellpose.version>${TrackMate-Cellpose.version}</sc.fiji.TrackMate-Cellpose.version>
1031+
1032+
<!-- TrackMate-Cellpose - https://github.com/trackmate-sc/TrackMate-Cellpose -->
1033+
<TrackMate-CSVImporter.version>3.1.2</TrackMate-CSVImporter.version>
1034+
<sc.fiji.TrackMate-CSVImporter.version>${TrackMate-CSVImporter.version}</sc.fiji.TrackMate-CSVImporter.version>
1035+
1036+
<!-- TrackMate-CTCRunner - https://github.com/trackmate-sc/TrackMate-CTCRunner -->
1037+
<!-- Disabled until trackmate-sc/TrackMate-CTCRunner#5 is addressed.
1038+
<TrackMate-CTCRunner.version>NONE</TrackMate-CTCRunner.version>
1039+
<sc.fiji.TrackMate-CTCRunner.version>${TrackMate-CTCRunner.version}</sc.fiji.TrackMate-CTCRunner.version>
1040+
-->
1041+
1042+
<!-- TrackMate-ExTrack - https://github.com/trackmate-sc/TrackMate-ExTrack -->
1043+
<TrackMate-ExTrack.version>1.2.4</TrackMate-ExTrack.version>
1044+
<sc.fiji.TrackMate-ExTrack.version>${TrackMate-ExTrack.version}</sc.fiji.TrackMate-ExTrack.version>
1045+
1046+
<!-- TrackMate-Ilastik - https://github.com/trackmate-sc/TrackMate-Ilastik -->
1047+
<TrackMate-Ilastik.version>1.2.2</TrackMate-Ilastik.version>
1048+
<sc.fiji.TrackMate-Ilastik.version>${TrackMate-Ilastik.version}</sc.fiji.TrackMate-Ilastik.version>
1049+
1050+
<!-- TrackMate-MorphoLibJ - https://github.com/trackmate-sc/TrackMate-MorphoLibJ -->
1051+
<TrackMate-MorphoLibJ.version>1.1.2</TrackMate-MorphoLibJ.version>
1052+
<sc.fiji.TrackMate-MorphoLibJ.version>${TrackMate-MorphoLibJ.version}</sc.fiji.TrackMate-MorphoLibJ.version>
1053+
1054+
<!-- TrackMate-Oneat - https://github.com/trackmate-sc/TrackMate-Oneat -->
1055+
<TrackMate-Oneat.version>3.0.0</TrackMate-Oneat.version>
1056+
<sc.fiji.TrackMate-Oneat.version>${TrackMate-Oneat.version}</sc.fiji.TrackMate-Oneat.version>
1057+
1058+
<!-- TrackMate-Skeleton - https://github.com/trackmate-sc/TrackMate-Skeleton -->
1059+
<TrackMate-Skeleton.version>2.0.0</TrackMate-Skeleton.version>
1060+
<sc.fiji.TrackMate-Skeleton.version>${TrackMate-Skeleton.version}</sc.fiji.TrackMate-Skeleton.version>
1061+
1062+
<!-- TrackMate-StarDist - https://github.com/trackmate-sc/TrackMate-StarDist -->
1063+
<!-- Disabled until trackmate-sc/TrackMate-StarDist#5 is addressed.
1064+
<TrackMate-StarDist.version>NONE</TrackMate-StarDist.version>
1065+
<sc.fiji.TrackMate-StarDist.version>${TrackMate-StarDist.version}</sc.fiji.TrackMate-StarDist.version>
1066+
-->
1067+
1068+
<!-- TrackMate-Weka - https://github.com/trackmate-sc/TrackMate-Weka -->
1069+
<TrackMate-Weka.version>1.1.1</TrackMate-Weka.version>
1070+
<sc.fiji.TrackMate-Weka.version>${TrackMate-Weka.version}</sc.fiji.TrackMate-Weka.version>
1071+
10251072
<!-- TrakEM2 - https://github.com/trakem2 -->
10261073

10271074
<!-- T2-NIT - https://github.com/trakem2/T2-NIT -->
@@ -2954,11 +3001,6 @@
29543001
<artifactId>TopoJ_</artifactId>
29553002
<version>${sc.fiji.TopoJ_.version}</version>
29563003
</dependency>
2957-
<dependency>
2958-
<groupId>sc.fiji</groupId>
2959-
<artifactId>TrackMate</artifactId>
2960-
<version>${sc.fiji.TrackMate.version}</version>
2961-
</dependency>
29623004
<dependency>
29633005
<groupId>sc.fiji</groupId>
29643006
<artifactId>Trainable_Segmentation</artifactId>
@@ -3135,6 +3177,68 @@
31353177
<version>${sc.fiji.spim_data.version}</version>
31363178
</dependency>
31373179

3180+
<!-- TrackMate - https://github.com/trackmate-sc -->
3181+
3182+
<dependency>
3183+
<groupId>sc.fiji</groupId>
3184+
<artifactId>TrackMate</artifactId>
3185+
<version>${sc.fiji.TrackMate.version}</version>
3186+
</dependency>
3187+
<dependency>
3188+
<groupId>sc.fiji</groupId>
3189+
<artifactId>TrackMate-Cellpose</artifactId>
3190+
<version>${sc.fiji.TrackMate-Cellpose.version}</version>
3191+
</dependency>
3192+
<dependency>
3193+
<groupId>sc.fiji</groupId>
3194+
<artifactId>TrackMate-CSVImporter</artifactId>
3195+
<version>${sc.fiji.TrackMate-CSVImporter.version}</version>
3196+
</dependency>
3197+
<!-- Disabled until trackmate-sc/TrackMate-CTCRunner#5 is addressed.
3198+
<dependency>
3199+
<groupId>sc.fiji</groupId>
3200+
<artifactId>TrackMate-CTCRunner</artifactId>
3201+
<version>${sc.fiji.TrackMate-CTCRunner.version}</version>
3202+
</dependency>
3203+
-->
3204+
<dependency>
3205+
<groupId>sc.fiji</groupId>
3206+
<artifactId>TrackMate-ExTrack</artifactId>
3207+
<version>${sc.fiji.TrackMate-ExTrack.version}</version>
3208+
</dependency>
3209+
<dependency>
3210+
<groupId>sc.fiji</groupId>
3211+
<artifactId>TrackMate-Ilastik</artifactId>
3212+
<version>${sc.fiji.TrackMate-Ilastik.version}</version>
3213+
</dependency>
3214+
<dependency>
3215+
<groupId>sc.fiji</groupId>
3216+
<artifactId>TrackMate-MorphoLibJ</artifactId>
3217+
<version>${sc.fiji.TrackMate-MorphoLibJ.version}</version>
3218+
</dependency>
3219+
<dependency>
3220+
<groupId>sc.fiji</groupId>
3221+
<artifactId>TrackMate-Oneat</artifactId>
3222+
<version>${sc.fiji.TrackMate-Oneat.version}</version>
3223+
</dependency>
3224+
<dependency>
3225+
<groupId>sc.fiji</groupId>
3226+
<artifactId>TrackMate-Skeleton</artifactId>
3227+
<version>${sc.fiji.TrackMate-Skeleton.version}</version>
3228+
</dependency>
3229+
<!-- Disabled until trackmate-sc/TrackMate-StarDist#5 is addressed.
3230+
<dependency>
3231+
<groupId>sc.fiji</groupId>
3232+
<artifactId>TrackMate-StarDist</artifactId>
3233+
<version>${sc.fiji.TrackMate-StarDist.version}</version>
3234+
</dependency>
3235+
-->
3236+
<dependency>
3237+
<groupId>sc.fiji</groupId>
3238+
<artifactId>TrackMate-Weka</artifactId>
3239+
<version>${sc.fiji.TrackMate-Weka.version}</version>
3240+
</dependency>
3241+
31383242
<!-- TrakEM2 - https://github.com/trakem2 -->
31393243

31403244
<dependency>

0 commit comments

Comments
 (0)